KEGG   PATHWAY: mgr04141
Entry
mgr04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Pyricularia oryzae
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mgr04141  Protein processing in endoplasmic reticulum
mgr04141

Other DBs
GO: 0030433 0034976
Organism
Pyricularia oryzae [GN:mgr]
Gene
MGG_04856  protein transporter SEC61 subunit alpha [KO:K10956]
MGG_03644  hypothetical protein [KO:K09481]
MGG_02742  protein transporter Sec61 subunit gamma [KO:K07342]
MGG_06172  translocation protein SEC62 [KO:K12275]
MGG_05320  translocation protein sec63 [KO:K09540]
MGG_09287  oligosaccharyltransferase alpha subunit [KO:K12666]
MGG_03687  hypothetical protein [KO:K12667]
MGG_05758  defender against cell death 1 protein [KO:K12668]
MGG_04500  dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12669]
MGG_02821  dolichyl-di-phosphooligosaccharide-protein glycotransferase [KO:K12670]
MGG_06667  hypothetical protein [KO:K00730]
MGG_04773  oligosaccharyl transferase STT3 subunit [KO:K07151] [EC:2.4.99.18]
MGG_04045  mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
MGG_09721  mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
MGG_10843  SIL1 [KO:K14001]
MGG_06648  hypothetical protein [KO:K09486]
MGG_02503  glucose-regulated protein [KO:K09490] [EC:3.6.4.10]
MGG_03565  DnaJ and TPR domain-containing protein [KO:K09523]
MGG_07502  chaperone dnaJ 2 [KO:K14002]
MGG_08623  neutral alpha-glucosidase AB [KO:K05546] [EC:3.2.1.207]
MGG_16417  hypothetical protein [KO:K08288]
MGG_01607  calnexin [KO:K08054]
MGG_00084  mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
MGG_11475  hypothetical protein [KO:K01230] [EC:3.2.1.113]
MGG_07666  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K01230] [EC:3.2.1.113]
MGG_00994  mannosyl-oligosaccharide 1,2-alpha-mannosidase IC [KO:K01230] [EC:3.2.1.113]
MGG_11599  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K01230] [EC:3.2.1.113]
MGG_15668  hypothetical protein [KO:K01230] [EC:3.2.1.113]
MGG_16202  hypothetical protein [KO:K01230] [EC:3.2.1.113]
MGG_11408  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741] [EC:3.2.1.209]
MGG_06367  vesicular integral-membrane protein VIP36 [KO:K10082]
MGG_05685  hypothetical protein [KO:K10080]
MGG_06362  small COPII coat GTPase [KO:K07953] [EC:3.6.5.-]
MGG_14666  protein transporter SEC13 [KO:K14004]
MGG_01108  protein transporter SEC31 [KO:K14005]
MGG_06910  protein transporter SEC23 [KO:K14006]
MGG_09564  protein transporter SEC24 [KO:K14007]
MGG_06569  transporter sec24 [KO:K14007]
MGG_03510  UDP-glucose:glycoprotein glucosyltransferase [KO:K11718] [EC:2.4.1.-]
MGG_05753  protein disulfide-isomerase [KO:K09580] [EC:5.3.4.1]
MGG_08973  hypothetical protein [KO:K09580] [EC:5.3.4.1]
MGG_05688  hypothetical protein [KO:K09580] [EC:5.3.4.1]
MGG_08164  protein disulfide-isomerase erp38 [KO:K09584] [EC:5.3.4.1]
MGG_06786  disulfide-isomerase A6 precurso [KO:K09584] [EC:5.3.4.1]
MGG_06175  hypothetical protein [KO:K13996] [EC:5.3.4.1]
MGG_00683  endoplasmic oxidoreductin-1 [KO:K10976] [EC:1.8.4.-]
MGG_02297  hypothetical protein [KO:K10088]
MGG_01208  hypothetical protein [KO:K14009]
MGG_06444  derlin-2.1 [KO:K13989]
MGG_12174  hypothetical protein [KO:K13989]
MGG_06184  hypothetical protein [KO:K24348]
MGG_04882  hypothetical protein [KO:K14012]
MGG_05193  cell division control protein 48 [KO:K13525]
MGG_04413  hypothetical protein [KO:K14015]
MGG_03175  ubiquitin fusion degradation protein 1 [KO:K14016]
MGG_06958  hsp70-like protein [KO:K03283]
MGG_11513  heat shock protein SSB1 [KO:K03283]
MGG_05249  chaperone dnaJ 3 [KO:K09503]
MGG_04462  chaperone dnaJ 2 [KO:K09503]
MGG_03907  hypothetical protein [KO:K09518]
MGG_06759  heat shock protein 90 [KO:K04079]
MGG_03983  hsp70-like protein [KO:K09562]
MGG_04358  hypothetical protein [KO:K13993]
MGG_03532  ubiquitin thioesterase OTU1 [KO:K13719] [EC:3.1.2.-]
MGG_14014  ubiquitin homeostasis protein lub1 [KO:K14018]
MGG_01656  UV excision repair protein Rad23 [KO:K10839]
MGG_01318  deubiquitination-protection protein dph1 [KO:K04523]
MGG_03598  PNG1 [KO:K01456] [EC:3.5.1.52]
MGG_03255  ubiquitin conjugation factor E4 [KO:K10597] [EC:2.3.2.27]
MGG_13200  eukaryotic translation initiation factor 2 subunit alpha [KO:K03237]
MGG_15988  IRE protein kinase [KO:K08852] [EC:2.7.11.1 3.1.26.-]
MGG_13328  RING finger membrane protein [KO:K10661] [EC:2.3.2.27]
MGG_02446  ubiquitin-conjugating enzyme [KO:K10578] [EC:2.3.2.23]
MGG_09977  ubiquitin-conjugating enzyme [KO:K04554] [EC:2.3.2.23]
MGG_14071  ubiquitin-conjugating enzyme [KO:K10575] [EC:2.3.2.23]
MGG_04081  ubiquitin-conjugating enzyme E2-18 kDa [KO:K04555] [EC:2.3.2.23]
MGG_12163  hypothetical protein [KO:K14022]
MGG_09205  E3 ubiquitin-protein ligase HRD1 [KO:K10601] [EC:2.3.2.27]
MGG_13508  ubiquitin-protein ligase Sel1/Ubx2 [KO:K14026]
MGG_08035  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
MGG_06562  ubiquitin-conjugating enzyme [KO:K06689] [EC:2.3.2.23]
MGG_08844  RING-box protein 1 [KO:K03868] [EC:2.3.2.32]
MGG_07145  Cullin-1 [KO:K03347]
MGG_04978  E3 ubiquitin ligase complex SCF subunit scon-3 [KO:K03094]
Compound
C00076  Calcium cation
G00009   
G00010   
G00011   
G00012   
G10694   
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
mgr00510  N-Glycan biosynthesis
mgr03050  Proteasome
mgr03060  Protein export
KO pathway
ko04141   
LinkDB

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