KEGG   PATHWAY: mgry00010
Entry
mgry00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Magnetospirillum gryphiswaldense MSR-1
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mgry00010  Glycolysis / Gluconeogenesis
mgry00010

Module
mgry_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:mgry00010]
mgry_M00002  Glycolysis, core module involving three-carbon compounds [PATH:mgry00010]
mgry_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mgry00010]
mgry_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mgry00010]
Other DBs
GO: 0006096 0006094
Organism
Magnetospirillum gryphiswaldense MSR-1 [GN:mgry]
Gene
MSR1_14080  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
MSR1_35110  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
MSR1_01340  pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
MSR1_07750  pfkA1; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
MSR1_12030  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
MSR1_38740  glpX_2; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
MSR1_23660  glpX_1; Fructose-1,6-bisphosphatase class 2 [KO:K11532] [EC:3.1.3.11 3.1.3.37]
MSR1_38710  fda; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
MSR1_13010  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
MSR1_32380  gapA; Glyceraldehyde-3-phosphate dehydrogenase A [KO:K00134] [EC:1.2.1.12]
MSR1_32390  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
MSR1_34920  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
MSR1_12970  eno; Enolase [KO:K01689] [EC:4.2.1.11]
MSR1_01980  ttuE; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
MSR1_39470  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
MSR1_12930  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
MSR1_12920  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MSR1_12910  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MSR1_27340  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
MSR1_12880  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSR1_11920  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MSR1_11930  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MSR1_11910  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MSR1_33720  acoD; Acetaldehyde dehydrogenase 2 [KO:K00138] [EC:1.2.1.-]
MSR1_04650  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_24870  acsA_4; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_35620  acsA_5; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_15070  acsA_3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
MSR1_26030  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
MSR1_05450  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mgry00020  Citrate cycle (TCA cycle)
mgry00030  Pentose phosphate pathway
mgry00500  Starch and sucrose metabolism
mgry00620  Pyruvate metabolism
mgry00640  Propanoate metabolism
mgry00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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