KEGG   PATHWAY: mhey00020
Entry
mhey00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylocystis heyeri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhey00020  Citrate cycle (TCA cycle)
mhey00020

Module
mhey_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhey00020]
mhey_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhey00020]
mhey_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhey00020]
mhey_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhey00020]
mhey_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhey00020]
Other DBs
GO: 0006099
Organism
Methylocystis heyeri [GN:mhey]
Gene
H2LOC_004805  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
H2LOC_020725  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H2LOC_020520  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
H2LOC_015350  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H2LOC_011040  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H2LOC_017570  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H2LOC_017565  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H2LOC_015770  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H2LOC_002020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H2LOC_017575  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H2LOC_011995  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H2LOC_003090  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H2LOC_003095  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H2LOC_003080  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
H2LOC_003085  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
H2LOC_018970  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H2LOC_011990  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H2LOC_013125  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
H2LOC_006505  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H2LOC_006500  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
H2LOC_006490  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhey00010  Glycolysis / Gluconeogenesis
mhey00053  Ascorbate and aldarate metabolism
mhey00061  Fatty acid biosynthesis
mhey00071  Fatty acid degradation
mhey00190  Oxidative phosphorylation
mhey00220  Arginine biosynthesis
mhey00250  Alanine, aspartate and glutamate metabolism
mhey00280  Valine, leucine and isoleucine degradation
mhey00350  Tyrosine metabolism
mhey00470  D-Amino acid metabolism
mhey00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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