KEGG   PATHWAY: mhk00020
Entry
mhk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Metallosphaera hakonensis JCM 8857 = DSM 7519
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhk00020  Citrate cycle (TCA cycle)
mhk00020

Module
mhk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhk00020]
mhk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhk00020]
mhk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhk00020]
mhk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhk00020]
mhk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhk00020]
Other DBs
GO: 0006099
Organism
Metallosphaera hakonensis JCM 8857 = DSM 7519 [GN:mhk]
Gene
DFR87_05395  citrate synthase [KO:K01647] [EC:2.3.3.1]
DFR87_11115  citrate synthase [KO:K01659] [EC:2.3.3.5]
DFR87_11400  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DFR87_03270  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DFR87_01520  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DFR87_10985  FAD-binding protein [KO:K00382] [EC:1.8.1.4]
DFR87_08450  NAD(P)-binding protein [KO:K00382] [EC:1.8.1.4]
DFR87_08650  FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
DFR87_04800  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DFR87_04795  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DFR87_10785  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DFR87_10790  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DFR87_03130  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DFR87_12140  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
DFR87_03125  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DFR87_12155  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DFR87_03120  disulfide reductase [KO:K00241]
DFR87_12145  succinate dehydrogenase [KO:K00241]
DFR87_12150  succinate dehydrogenase [KO:K00242]
DFR87_03115  succinate dehydrogenase [KO:K18859]
DFR87_12130  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DFR87_12135  Fe-S hydro-lyase subunit beta [KO:K01678] [EC:4.2.1.2]
DFR87_11430  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DFR87_03910  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DFR87_11480  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DFR87_04615  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DFR87_05210  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DFR87_04620  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
DFR87_05205  3-methyl-2-oxobutanoate dehydrogenase subunit beta [KO:K00170] [EC:1.2.7.1]
DFR87_05220  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
DFR87_04605  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
DFR87_04610  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
DFR87_05215  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhk00010  Glycolysis / Gluconeogenesis
mhk00061  Fatty acid biosynthesis
mhk00071  Fatty acid degradation
mhk00190  Oxidative phosphorylation
mhk00220  Arginine biosynthesis
mhk00250  Alanine, aspartate and glutamate metabolism
mhk00280  Valine, leucine and isoleucine degradation
mhk00350  Tyrosine metabolism
mhk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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