KEGG   PATHWAY: micb00030
Entry
micb00030                   Pathway                                
Name
Pentose phosphate pathway - Micromonospora sp. B006
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
micb00030  Pentose phosphate pathway
micb00030

Module
micb_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:micb00030]
micb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:micb00030]
micb_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:micb00030]
micb_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:micb00030]
micb_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:micb00030]
Other DBs
GO: 0006098
Organism
Micromonospora sp. B006 [GN:micb]
Gene
MicB006_2650  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
MicB006_3320  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
MicB006_1040  putative regulator of the mannose operon ManO [KO:K15916] [EC:5.3.1.9 5.3.1.8]
MicB006_3321  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
MicB006_3323  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
MicB006_4074  hypothetical protein [KO:K07404] [EC:3.1.1.31]
MicB006_0005  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MicB006_3855  6-phosphogluconate dehydrogenase decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
MicB006_5419  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
MicB006_6169  transketolase N-terminal section [KO:K00615] [EC:2.2.1.1]
MicB006_6170  transketolase C-terminal section [KO:K00615] [EC:2.2.1.1]
MicB006_2355  transketolase [KO:K00615] [EC:2.2.1.1]
MicB006_3318  transketolase [KO:K00615] [EC:2.2.1.1]
MicB006_3319  transaldolase [KO:K00616] [EC:2.2.1.2]
MicB006_3958  ribose 5-phosphate isomerase B/galactose 6-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
MicB006_4688  xylulose-5-phosphate phosphoketolase/fructose-6-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
MicB006_2982  xylulose-5-phosphate phosphoketolase/fructose-6-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
MicB006_0842  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
MicB006_1270  ribokinase [KO:K00852] [EC:2.7.1.15]
MicB006_5176  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
MicB006_4284  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
MicB006_0788  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
MicB006_2593  4-Hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MicB006_3083  4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
MicB006_4580  glucose 1-dehydrogenase [KO:K22969] [EC:1.1.1.47]
MicB006_4865  gluconolactonase [KO:K01053] [EC:3.1.1.17]
MicB006_3086  gluconokinase [KO:K00851] [EC:2.7.1.12]
MicB006_1108  gluconokinase [KO:K25031] [EC:2.7.1.12]
MicB006_3168  gluconokinase [KO:K25031] [EC:2.7.1.12]
MicB006_2594  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
MicB006_3084  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
MicB006_0179  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
MicB006_0909  fructose-16-bisphosphatase [KO:K02446] [EC:3.1.3.11]
MicB006_3532  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
micb00010  Glycolysis / Gluconeogenesis
micb00040  Pentose and glucuronate interconversions
micb00052  Galactose metabolism
micb00230  Purine metabolism
micb00240  Pyrimidine metabolism
micb00340  Histidine metabolism
micb00630  Glyoxylate and dicarboxylate metabolism
micb00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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