KEGG   PATHWAY: mics00020
Entry
mics00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Microbacterium sp. SGAir0570
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mics00020  Citrate cycle (TCA cycle)
mics00020

Module
mics_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mics00020]
mics_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mics00020]
mics_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mics00020]
mics_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mics00020]
mics_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mics00020]
Other DBs
GO: 0006099
Organism
Microbacterium sp. SGAir0570 [GN:mics]
Gene
C1N74_08910  citrate synthase [KO:K01647] [EC:2.3.3.1]
C1N74_06615  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C1N74_12660  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C1N74_11880  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C1N74_05690  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1N74_06530  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1N74_12780  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C1N74_12785  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C1N74_12410  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C1N74_12415  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C1N74_12400  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C1N74_12405  succinate dehydrogenase [KO:K00242]
C1N74_09175  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C1N74_01395  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C1N74_11090  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C1N74_05720  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
C1N74_12555  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
C1N74_06355  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C1N74_06525  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mics00010  Glycolysis / Gluconeogenesis
mics00053  Ascorbate and aldarate metabolism
mics00061  Fatty acid biosynthesis
mics00071  Fatty acid degradation
mics00190  Oxidative phosphorylation
mics00220  Arginine biosynthesis
mics00250  Alanine, aspartate and glutamate metabolism
mics00280  Valine, leucine and isoleucine degradation
mics00350  Tyrosine metabolism
mics00470  D-Amino acid metabolism
mics00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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