KEGG   PATHWAY: minc00020
Entry
minc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mangifera indica (mango)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
minc00020  Citrate cycle (TCA cycle)
minc00020

Module
minc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:minc00020]
minc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:minc00020]
minc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:minc00020]
Other DBs
GO: 0006099
Organism
Mangifera indica (mango) [GN:minc]
Gene
123195551  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
123195945  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
123216169  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
123220055  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
123209535  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
123221208  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
123225100  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
123202036  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
123196109  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
123222890  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
123199370  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
123196379  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
123197283  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
123197920  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
123222449  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like isoform X1 [KO:K00031] [EC:1.1.1.42]
123201897  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
123192420  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
123193933  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
123199409  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
123227637  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
123193060  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
123200946  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
123201883  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
123193352  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
123207493  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
123196102  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
123220970  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
123221336  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
123212437  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
123204251  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
123215386  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123224547  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123199422  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
123212425  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
123195437  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123195861  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123223215  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123204607  uncharacterized protein LOC123204607 isoform X1 [KO:K00236]
123217074  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
123217075  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
123216028  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
123207842  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
123221648  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
123212392  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
123214199  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
123202175  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123204822  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
123216735  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123206167  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
123206200  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
123217931  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123199042  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
123199043  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
123212036  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
123226736  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
123199121  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
123214394  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
123204248  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
123216944  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
123217772  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
123223212  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
123215608  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
123193360  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
123219170  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
123212882  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
123213415  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic isoform X1 [KO:K00627] [EC:2.3.1.12]
123203761  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
123192181  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
123216782  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
123217878  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
123230004  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
123212137  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
minc00010  Glycolysis / Gluconeogenesis
minc00053  Ascorbate and aldarate metabolism
minc00061  Fatty acid biosynthesis
minc00062  Fatty acid elongation
minc00071  Fatty acid degradation
minc00190  Oxidative phosphorylation
minc00220  Arginine biosynthesis
minc00250  Alanine, aspartate and glutamate metabolism
minc00280  Valine, leucine and isoleucine degradation
minc00350  Tyrosine metabolism
minc00470  D-Amino acid metabolism
minc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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