KEGG   PATHWAY: ming00020
Entry
ming00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Macadamia integrifolia (macadamia nut)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ming00020  Citrate cycle (TCA cycle)
ming00020

Module
ming_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ming00020]
ming_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ming00020]
ming_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ming00020]
Other DBs
GO: 0006099
Organism
Macadamia integrifolia (macadamia nut) [GN:ming]
Gene
122061916  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122069699  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
122091801  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
122080028  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
122092454  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
122068954  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
122056955  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
122088916  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
122080902  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
122094119  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
122089123  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
122080027  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
122089084  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122062451  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
122094688  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122087641  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122060228  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122086022  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122056957  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122059646  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122063315  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122091408  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
122070667  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122058121  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122067921  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122071774  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122088949  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122090934  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122073838  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
122074322  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
122077402  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122061642  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
122088862  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
122081728  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
122086045  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
122089263  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
122092708  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122071089  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
122084660  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
122059616  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122059681  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
122088894  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122090034  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122084957  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122076877  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122061830  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
122082804  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
122085751  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122089287  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
122077116  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
122077149  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
122080389  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
122089405  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
122063190  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
122063287  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
122065664  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
122072717  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ming00010  Glycolysis / Gluconeogenesis
ming00053  Ascorbate and aldarate metabolism
ming00061  Fatty acid biosynthesis
ming00062  Fatty acid elongation
ming00071  Fatty acid degradation
ming00190  Oxidative phosphorylation
ming00220  Arginine biosynthesis
ming00250  Alanine, aspartate and glutamate metabolism
ming00280  Valine, leucine and isoleucine degradation
ming00350  Tyrosine metabolism
ming00470  D-Amino acid metabolism
ming00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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