KEGG   PATHWAY: mju00020
Entry
mju00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Maniola jurtina (meadow brown)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mju00020  Citrate cycle (TCA cycle)
mju00020

Module
mju_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mju00020]
mju_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mju00020]
mju_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mju00020]
mju_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mju00020]
mju_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mju00020]
Other DBs
GO: 0006099
Organism
Maniola jurtina (meadow brown) [GN:mju]
Gene
123880561  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
123878592  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
123879478  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
123872023  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
123864311  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
123880921  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
123874301  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
123877648  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
123870940  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
123866890  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
123867434  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
123874988  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
123878880  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
123867031  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
123876741  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
123864229  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123864237  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123874095  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
123880348  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
123877743  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123880659  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123880375  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
123870309  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
123874868  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like isoform X1 [KO:K00237]
123869863  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
123872902  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
123868669  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
123869697  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
123870681  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
123872344  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123873846  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
123873324  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
123865536  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
123876247  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
123868688  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
123874083  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mju00010  Glycolysis / Gluconeogenesis
mju00053  Ascorbate and aldarate metabolism
mju00061  Fatty acid biosynthesis
mju00062  Fatty acid elongation
mju00071  Fatty acid degradation
mju00190  Oxidative phosphorylation
mju00220  Arginine biosynthesis
mju00250  Alanine, aspartate and glutamate metabolism
mju00280  Valine, leucine and isoleucine degradation
mju00350  Tyrosine metabolism
mju00470  D-Amino acid metabolism
mju00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system