KEGG   PATHWAY: mlen00020
Entry
mlen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mammaliicoccus lentus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mlen00020  Citrate cycle (TCA cycle)
mlen00020

Module
mlen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mlen00020]
mlen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mlen00020]
mlen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mlen00020]
mlen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mlen00020]
mlen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mlen00020]
Other DBs
GO: 0006099
Organism
Mammaliicoccus lentus [GN:mlen]
Gene
H3V22_03525  citrate synthase [KO:K01647] [EC:2.3.3.1]
H3V22_01485  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
H3V22_03520  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H3V22_02050  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
H3V22_02045  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
H3V22_13905  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3V22_02550  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3V22_01155  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H3V22_01160  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H3V22_00675  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H3V22_00670  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H3V22_00195  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H3V22_00200  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H3V22_00190  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
H3V22_04335  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H3V22_03515  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H3V22_01570  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
H3V22_08020  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
H3V22_00025  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H3V22_04070  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
H3V22_13890  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H3V22_13895  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
H3V22_13900  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mlen00010  Glycolysis / Gluconeogenesis
mlen00053  Ascorbate and aldarate metabolism
mlen00061  Fatty acid biosynthesis
mlen00071  Fatty acid degradation
mlen00190  Oxidative phosphorylation
mlen00220  Arginine biosynthesis
mlen00250  Alanine, aspartate and glutamate metabolism
mlen00280  Valine, leucine and isoleucine degradation
mlen00350  Tyrosine metabolism
mlen00470  D-Amino acid metabolism
mlen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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