KEGG   PATHWAY: mman00020
Entry
mman00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium mantenii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mman00020  Citrate cycle (TCA cycle)
mman00020

Module
mman_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mman00020]
mman_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mman00020]
mman_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mman00020]
mman_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mman00020]
mman_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mman00020]
Other DBs
GO: 0006099
Organism
Mycobacterium mantenii [GN:mman]
Gene
MMAN_45550  citrate synthase [KO:K01647] [EC:2.3.3.1]
MMAN_51890  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MMAN_51910  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MMAN_07110  acn; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
MMAN_17780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MMAN_20830  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MMAN_29880  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MMAN_29890  icd2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MMAN_27070  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MMAN_34050  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAN_23870  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MMAN_23860  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MMAN_52810  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MMAN_52800  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MMAN_36380  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MMAN_29740  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MMAN_36390  fumarate reductase [KO:K00240] [EC:1.3.5.1]
MMAN_20780  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MMAN_29750  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MMAN_29720  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MMAN_29730  sdhD; succinate dehydrogenase [KO:K00242]
MMAN_54530  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MMAN_27120  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MMAN_02620  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MMAN_45540  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MMAN_36900  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MMAN_17980  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MMAN_14130  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MMAN_14140  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MMAN_20870  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MMAN_14150  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MMAN_17490  hypothetical protein [KO:K00627] [EC:2.3.1.12]
MMAN_20860  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mman00010  Glycolysis / Gluconeogenesis
mman00053  Ascorbate and aldarate metabolism
mman00061  Fatty acid biosynthesis
mman00071  Fatty acid degradation
mman00190  Oxidative phosphorylation
mman00220  Arginine biosynthesis
mman00250  Alanine, aspartate and glutamate metabolism
mman00280  Valine, leucine and isoleucine degradation
mman00350  Tyrosine metabolism
mman00470  D-Amino acid metabolism
mman00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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