KEGG   PATHWAY: mmas00020
Entry
mmas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corallococcus macrosporus DSM 14697
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmas00020  Citrate cycle (TCA cycle)
mmas00020

Module
mmas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmas00020]
mmas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmas00020]
mmas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmas00020]
mmas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmas00020]
Other DBs
GO: 0006099
Organism
Corallococcus macrosporus DSM 14697 [GN:mmas]
Gene
MYMAC_000444  citrate synthase [KO:K01647] [EC:2.3.3.1]
MYMAC_003460  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
MYMAC_001356  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MYMAC_003479  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MYMAC_006069  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
MYMAC_005816  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
MYMAC_005817  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MYMAC_004129  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYMAC_003484  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MYMAC_003483  succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MYMAC_003481  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
MYMAC_003482  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MYMAC_001103  succinate dehydrogenase [KO:K00241]
MYMAC_003112  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MYMAC_006146  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MYMAC_003480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MYMAC_003816  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MYMAC_001266  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MYMAC_002627  dehydrogenase [KO:K00161] [EC:1.2.4.1]
MYMAC_002628  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MYMAC_004127  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
MYMAC_002629  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmas00010  Glycolysis / Gluconeogenesis
mmas00053  Ascorbate and aldarate metabolism
mmas00061  Fatty acid biosynthesis
mmas00071  Fatty acid degradation
mmas00190  Oxidative phosphorylation
mmas00220  Arginine biosynthesis
mmas00250  Alanine, aspartate and glutamate metabolism
mmas00280  Valine, leucine and isoleucine degradation
mmas00350  Tyrosine metabolism
mmas00470  D-Amino acid metabolism
mmas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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