KEGG   PATHWAY: mory00020
Entry
mory00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium orygis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mory00020  Citrate cycle (TCA cycle)
mory00020

Module
mory_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mory00020]
mory_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mory00020]
mory_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mory00020]
mory_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mory00020]
mory_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mory00020]
Other DBs
GO: 0006099
Organism
Mycobacterium orygis [GN:mory]
Gene
MO_000949  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MO_000955  citrate synthase [KO:K01647] [EC:2.3.3.1]
MO_001214  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
MO_001584  acn; iron-regulated aconitate hydratase Acn [KO:K01681] [EC:4.2.1.3]
MO_000073  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MO_003489  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MO_001339  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MO_000489  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MO_002576  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MO_002575  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MO_001016  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MO_001015  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MO_000263  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MO_003466  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MO_000262  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MO_003467  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MO_003464  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MO_003465  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MO_001665  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
MO_001666  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
MO_001667  fumarate reductase subunit C [KO:K00246]
MO_001668  frdD; fumarate reductase subunit FrdD [KO:K00247]
MO_001181  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MO_001331  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MO_002980  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MO_003102  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MO_000225  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MO_002350  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MO_002318  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mory00010  Glycolysis / Gluconeogenesis
mory00053  Ascorbate and aldarate metabolism
mory00061  Fatty acid biosynthesis
mory00071  Fatty acid degradation
mory00190  Oxidative phosphorylation
mory00220  Arginine biosynthesis
mory00250  Alanine, aspartate and glutamate metabolism
mory00280  Valine, leucine and isoleucine degradation
mory00350  Tyrosine metabolism
mory00470  D-Amino acid metabolism
mory00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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