KEGG   PATHWAY: mprt00020
Entry
mprt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Microbacterium protaetiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mprt00020  Citrate cycle (TCA cycle)
mprt00020

Module
mprt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mprt00020]
mprt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mprt00020]
mprt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mprt00020]
mprt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mprt00020]
mprt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mprt00020]
Other DBs
GO: 0006099
Organism
Microbacterium protaetiae [GN:mprt]
Gene
ET475_14120  citrate synthase [KO:K01647] [EC:2.3.3.1]
ET475_14205  hypothetical protein [KO:K01647] [EC:2.3.3.1]
ET475_14210  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
ET475_09475  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ET475_15835  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ET475_02320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ET475_12270  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
ET475_15930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ET475_17655  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ET475_02385  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ET475_02390  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ET475_01670  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ET475_01675  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ET475_01660  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ET475_01665  succinate dehydrogenase [KO:K00242]
ET475_13725  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ET475_07995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ET475_01485  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
ET475_17625  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ET475_01875  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
ET475_16015  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
ET475_09565  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ET475_09560  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ET475_15935  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
ET475_09555  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mprt00010  Glycolysis / Gluconeogenesis
mprt00053  Ascorbate and aldarate metabolism
mprt00061  Fatty acid biosynthesis
mprt00062  Fatty acid elongation
mprt00071  Fatty acid degradation
mprt00190  Oxidative phosphorylation
mprt00220  Arginine biosynthesis
mprt00250  Alanine, aspartate and glutamate metabolism
mprt00280  Valine, leucine and isoleucine degradation
mprt00350  Tyrosine metabolism
mprt00470  D-Amino acid metabolism
mprt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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