KEGG   PATHWAY: mpsc00020
Entry
mpsc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium psychrotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpsc00020  Citrate cycle (TCA cycle)
mpsc00020

Module
mpsc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpsc00020]
mpsc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpsc00020]
mpsc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpsc00020]
mpsc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpsc00020]
mpsc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpsc00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium psychrotolerans [GN:mpsc]
Gene
MPSYJ_18390  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MPSYJ_18430  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MPSYJ_39450  acnA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
MPSYJ_37320  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MPSYJ_23910  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MPSYJ_02810  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPSYJ_13410  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPSYJ_28210  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MPSYJ_28220  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MPSYJ_19810  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MPSYJ_19800  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MPSYJ_06160  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPSYJ_51460  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPSYJ_06170  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPSYJ_51470  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPSYJ_51440  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MPSYJ_51450  sdhD; succinate dehydrogenase [KO:K00242]
MPSYJ_22030  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MPSYJ_35950  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MPSYJ_43750  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MPSYJ_45050  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MPSYJ_06680  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MPSYJ_30230  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MPSYJ_53100  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MPSYJ_53090  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MPSYJ_30790  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MPSYJ_53080  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MPSYJ_00330  nifJ-1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpsc00010  Glycolysis / Gluconeogenesis
mpsc00053  Ascorbate and aldarate metabolism
mpsc00061  Fatty acid biosynthesis
mpsc00071  Fatty acid degradation
mpsc00190  Oxidative phosphorylation
mpsc00220  Arginine biosynthesis
mpsc00250  Alanine, aspartate and glutamate metabolism
mpsc00280  Valine, leucine and isoleucine degradation
mpsc00350  Tyrosine metabolism
mpsc00470  D-Amino acid metabolism
mpsc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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