KEGG   PATHWAY: mpw00020
Entry
mpw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Myroides profundi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpw00020  Citrate cycle (TCA cycle)
mpw00020

Module
mpw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpw00020]
mpw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpw00020]
mpw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpw00020]
mpw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpw00020]
mpw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpw00020]
Other DBs
GO: 0006099
Organism
Myroides profundi [GN:mpw]
Gene
MPR_3095  citrate synthase [KO:K01647] [EC:2.3.3.1]
MPR_1025  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MPR_1590  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MPR_1023  aconitate hydratase 2 / 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MPR_2934  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MPR_0475  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MPR_0476  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
MPR_3056  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
MPR_0775  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPR_0826  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPR_1814  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MPR_1723  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
MPR_1447  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
MPR_1568  succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
MPR_3513  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPR_2501  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MPR_3512  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPR_2500  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MPR_3514  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MPR_2502  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MPR_3465  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
MPR_2796  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MPR_1249  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MPR_1522  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MPR_3338  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MPR_3204  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
MPR_0639  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
MPR_3203  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpw00010  Glycolysis / Gluconeogenesis
mpw00053  Ascorbate and aldarate metabolism
mpw00061  Fatty acid biosynthesis
mpw00071  Fatty acid degradation
mpw00190  Oxidative phosphorylation
mpw00220  Arginine biosynthesis
mpw00250  Alanine, aspartate and glutamate metabolism
mpw00280  Valine, leucine and isoleucine degradation
mpw00350  Tyrosine metabolism
mpw00470  D-Amino acid metabolism
mpw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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