KEGG   PATHWAY: mrh00020
Entry
mrh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium rhodesiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrh00020  Citrate cycle (TCA cycle)
mrh00020

Module
mrh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mrh00020]
mrh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mrh00020]
mrh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mrh00020]
mrh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mrh00020]
mrh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mrh00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium rhodesiae [GN:mrh]
Gene
MycrhN_2654  citrate synthase [KO:K01647] [EC:2.3.3.1]
MycrhN_2658  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
MycrhN_0168  aconitase A [KO:K01681] [EC:4.2.1.3]
MycrhN_5289  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
MycrhN_0518  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
MycrhN_3717  2-oxoglutarate dehydrogenase, E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MycrhN_1181  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MycrhN_4197  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MycrhN_4198  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MycrhN_3316  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MycrhN_3315  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MycrhN_0174  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MycrhN_0502  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MycrhN_1469  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MycrhN_3155  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MycrhN_0173  succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
MycrhN_0503  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MycrhN_1470  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MycrhN_0175  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
MycrhN_0500  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MycrhN_0501  succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
MycrhN_3538  fumarase [KO:K01679] [EC:4.2.1.2]
MycrhN_3713  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MycrhN_5874  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MycrhN_1529  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MycrhN_4439  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
MycrhN_4492  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
MycrhN_0030  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mrh00010  Glycolysis / Gluconeogenesis
mrh00053  Ascorbate and aldarate metabolism
mrh00061  Fatty acid biosynthesis
mrh00071  Fatty acid degradation
mrh00190  Oxidative phosphorylation
mrh00220  Arginine biosynthesis
mrh00250  Alanine, aspartate and glutamate metabolism
mrh00280  Valine, leucine and isoleucine degradation
mrh00350  Tyrosine metabolism
mrh00470  D-Amino acid metabolism
mrh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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