KEGG   PATHWAY: msag00030
Entry
msag00030                   Pathway                                
Name
Pentose phosphate pathway - Micromonospora sagamiensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msag00030  Pentose phosphate pathway
msag00030

Module
msag_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:msag00030]
msag_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:msag00030]
msag_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:msag00030]
msag_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:msag00030]
Other DBs
GO: 0006098
Organism
Micromonospora sagamiensis [GN:msag]
Gene
GCM10017556_05470  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
GCM10017556_04460  pgiA; glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
GCM10017556_35500  bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase [KO:K15916] [EC:5.3.1.9 5.3.1.8]
GCM10017556_05480  zwf; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
GCM10017556_05500  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
GCM10017556_13280  hypothetical protein [KO:K07404] [EC:3.1.1.31]
GCM10017556_26160  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
GCM10017556_47060  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
GCM10017556_05450  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
GCM10017556_24780  transketolase [KO:K00615] [EC:2.2.1.1]
GCM10017556_24790  transketolase [KO:K00615] [EC:2.2.1.1]
GCM10017556_05460  talA; transaldolase [KO:K00616] [EC:2.2.1.2]
GCM10017556_12230  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
GCM10017556_42340  xfp; putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
GCM10017556_04450  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GCM10017556_33450  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GCM10017556_56320  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
GCM10017556_38250  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
GCM10017556_56270  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
GCM10017556_43850  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
GCM10017556_32990  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
GCM10017556_04530  eda; ketohydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GCM10017556_57840  eda; 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GCM10017556_45410  gdh; glucose-1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
GCM10017556_18260  gdh; threonine dehydrogenase [KO:K22969] [EC:1.1.1.47]
GCM10017556_03690  gluconate kinase [KO:K25031] [EC:2.7.1.12]
GCM10017556_57850  carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
GCM10017556_04400  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GCM10017556_27540  fba; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GCM10017556_34130  glpX; fructose-1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
GCM10017556_04510  1-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
GCM10017556_07550  pfk; pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
msag00010  Glycolysis / Gluconeogenesis
msag00040  Pentose and glucuronate interconversions
msag00052  Galactose metabolism
msag00230  Purine metabolism
msag00240  Pyrimidine metabolism
msag00340  Histidine metabolism
msag00630  Glyoxylate and dicarboxylate metabolism
msag00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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