KEGG   PATHWAY: msd00020
Entry
msd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Myxococcus stipitatus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msd00020  Citrate cycle (TCA cycle)
msd00020

Module
msd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msd00020]
msd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msd00020]
msd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msd00020]
msd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msd00020]
Other DBs
GO: 0006099
Organism
Myxococcus stipitatus [GN:msd]
Gene
MYSTI_00437  citrate synthase [KO:K01647] [EC:2.3.3.1]
MYSTI_04455  citrate synthase [KO:K01647] [EC:2.3.3.1]
MYSTI_01383  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MYSTI_04436  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MYSTI_06958  putative isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
MYSTI_06662  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MYSTI_06663  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MYSTI_03731  alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MYSTI_04431  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
MYSTI_04432  succinyl-CoA synthase subunit beta [KO:K01903] [EC:6.2.1.5]
MYSTI_04434  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MYSTI_04433  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MYSTI_01114  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
MYSTI_03662  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
MYSTI_07035  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MYSTI_04435  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MYSTI_04047  propionyl-CoA carboxylase subunit alpha [KO:K01958] [EC:6.4.1.1]
MYSTI_01286  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MYSTI_04329  pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
MYSTI_03067  pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
MYSTI_04328  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MYSTI_03068  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MYSTI_03733  alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
MYSTI_03069  pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msd00010  Glycolysis / Gluconeogenesis
msd00053  Ascorbate and aldarate metabolism
msd00061  Fatty acid biosynthesis
msd00071  Fatty acid degradation
msd00190  Oxidative phosphorylation
msd00220  Arginine biosynthesis
msd00250  Alanine, aspartate and glutamate metabolism
msd00280  Valine, leucine and isoleucine degradation
msd00350  Tyrosine metabolism
msd00470  D-Amino acid metabolism
msd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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