KEGG   PATHWAY: msin00020
Entry
msin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Magnolia sinica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msin00020  Citrate cycle (TCA cycle)
msin00020

Module
msin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msin00020]
msin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msin00020]
msin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msin00020]
Other DBs
GO: 0006099
Organism
Magnolia sinica [GN:msin]
Gene
131219475  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
131222378  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
131240932  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
131245485  citrate synthase, glyoxysomal isoform X1 [KO:K01647] [EC:2.3.3.1]
131225125  ATP-citrate synthase beta chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
131225323  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
131231290  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
131231883  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
131237214  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
131226125  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
131240291  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
131240875  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
131240876  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
131234448  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
131253066  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
131229518  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
131230403  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
131252997  uncharacterized protein LOC131252997 [KO:K00164] [EC:1.2.4.2]
131243620  uncharacterized protein LOC131243620 [KO:K00164] [EC:1.2.4.2]
131246684  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
131224778  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131225910  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131230859  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131236831  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
131242921  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
131240439  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131245846  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131229791  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
131238028  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
131240778  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
131225214  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
131240374  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
131233893  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
131245896  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
131218790  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
131250848  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131250849  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131228598  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
131241065  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131242074  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131242075  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131245341  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131218597  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
131218775  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X1 [KO:K01610] [EC:4.1.1.49]
131229218  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
131248649  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131256712  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
131232723  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
131220704  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
131239379  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
131239227  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
131251914  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
131258074  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
131217630  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
131234372  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msin00010  Glycolysis / Gluconeogenesis
msin00053  Ascorbate and aldarate metabolism
msin00061  Fatty acid biosynthesis
msin00062  Fatty acid elongation
msin00071  Fatty acid degradation
msin00190  Oxidative phosphorylation
msin00220  Arginine biosynthesis
msin00250  Alanine, aspartate and glutamate metabolism
msin00280  Valine, leucine and isoleucine degradation
msin00350  Tyrosine metabolism
msin00470  D-Amino acid metabolism
msin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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