KEGG   PATHWAY: mspo00020
Entry
mspo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycetocola spongiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mspo00020  Citrate cycle (TCA cycle)
mspo00020

Module
mspo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mspo00020]
mspo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mspo00020]
mspo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mspo00020]
mspo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mspo00020]
mspo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mspo00020]
Other DBs
GO: 0006099
Organism
Mycetocola spongiae [GN:mspo]
Gene
KXZ72_14040  citrate synthase [KO:K01647] [EC:2.3.3.1]
KXZ72_02150  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KXZ72_12120  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KXZ72_06365  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KXZ72_02040  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KXZ72_12035  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KXZ72_12030  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KXZ72_04390  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
KXZ72_07070  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KXZ72_07075  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KXZ72_07060  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KXZ72_07065  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KXZ72_13800  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KXZ72_10255  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KXZ72_07480  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KXZ72_03775  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KXZ72_07245  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KXZ72_01900  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KXZ72_12465  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KXZ72_12470  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KXZ72_02035  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KXZ72_12475  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mspo00010  Glycolysis / Gluconeogenesis
mspo00053  Ascorbate and aldarate metabolism
mspo00061  Fatty acid biosynthesis
mspo00071  Fatty acid degradation
mspo00190  Oxidative phosphorylation
mspo00220  Arginine biosynthesis
mspo00250  Alanine, aspartate and glutamate metabolism
mspo00280  Valine, leucine and isoleucine degradation
mspo00350  Tyrosine metabolism
mspo00470  D-Amino acid metabolism
mspo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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