KEGG   PATHWAY: msut00020
Entry
msut00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mesobacillus subterraneus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msut00020  Citrate cycle (TCA cycle)
msut00020

Module
msut_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msut00020]
msut_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msut00020]
Other DBs
GO: 0006099
Organism
Mesobacillus subterraneus [GN:msut]
Gene
LC048_09495  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LC048_10820  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LC048_03830  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LC048_07935  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LC048_14060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LC048_05725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LC048_12475  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LC048_16355  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LC048_12470  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LC048_16350  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LC048_16345  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
LC048_16360  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
LC048_12975  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LC048_12980  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LC048_16800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LC048_04125  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LC048_04130  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LC048_16805  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LC048_04120  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LC048_17460  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LC048_15995  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LC048_03835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LC048_23305  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LC048_03125  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LC048_12210  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LC048_14075  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LC048_14070  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LC048_12200  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
LC048_14065  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
LC048_14430  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
LC048_14435  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msut00010  Glycolysis / Gluconeogenesis
msut00053  Ascorbate and aldarate metabolism
msut00061  Fatty acid biosynthesis
msut00062  Fatty acid elongation
msut00071  Fatty acid degradation
msut00190  Oxidative phosphorylation
msut00220  Arginine biosynthesis
msut00250  Alanine, aspartate and glutamate metabolism
msut00280  Valine, leucine and isoleucine degradation
msut00350  Tyrosine metabolism
msut00470  D-Amino acid metabolism
msut00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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