KEGG   PATHWAY: mtb00020
Entry
mtb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis KZN 1435
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtb00020  Citrate cycle (TCA cycle)
mtb00020

Module
mtb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtb00020]
mtb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtb00020]
mtb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtb00020]
mtb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtb00020]
mtb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtb00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis KZN 1435 [GN:mtb]
Gene
TBMG_02851  citrate synthase I gltA1 [KO:K01647] [EC:2.3.3.1]
TBMG_03092  citrate synthase I gltA2 [KO:K01647] [EC:2.3.3.1]
TBMG_03099  citrate synthase II citA [KO:K01647] [EC:2.3.3.1]
TBMG_02506  iron-regulated aconitate hydratase acn [KO:K01681] [EC:4.2.1.3]
TBMG_00066  isocitrate dehydrogenase [NADP] icd2 [KO:K00031] [EC:1.1.1.42]
TBMG_03388  isocitrate dehydrogenase [NADP] icd1 [KO:K00031] [EC:1.1.1.42]
TBMG_02733  2-oxoglutarate dehydrogenase sucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
TBMG_00464  dihydrolipoamide dehydrogenase lpd [KO:K00382] [EC:1.8.1.4]
TBMG_01518  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TBMG_01519  oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TBMG_04091  succinyl-CoA synthetase subunit alpha sucD [KO:K01902] [EC:6.2.1.5]
TBMG_03037  succinyl-CoA synthetase subunit beta sucC [KO:K01903] [EC:6.2.1.5]
TBMG_00250  succinate dehydrogenase iron-sulfur subunit [KO:K00239] [EC:1.3.5.1]
TBMG_03367  succinate dehydrogenase flavoprotein subunit sdhA [KO:K00239] [EC:1.3.5.1]
TBMG_00249  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TBMG_03368  succinate dehydrogenase iron-sulphur protein subunit sdhB [KO:K00240] [EC:1.3.5.1]
TBMG_03365  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
TBMG_03366  succinate dehydrogenase hydrophobic membrane anchor subunit sdhD [KO:K00242]
TBMG_02426  fumarate reductase flavoprotein subunit frdA [KO:K00244] [EC:1.3.5.1]
TBMG_02425  fumarate reductase iron-sulfur subunit frdB [KO:K00245] [EC:1.3.5.1]
TBMG_02424  fumarate reductase membrane anchor subunit frdC [KO:K00246]
TBMG_02423  fumarate reductase membrane anchor subunit frdD [KO:K00247]
TBMG_02886  fumarase fum [KO:K01679] [EC:4.2.1.2]
TBMG_02741  malate dehydrogenase mdh [KO:K00024] [EC:1.1.1.37]
TBMG_01120  malate:quinone oxidoreductase mqo [KO:K00116] [EC:1.1.5.4]
TBMG_01003  pyruvate carboxylase pca [KO:K01958] [EC:6.4.1.1]
TBMG_00212  iron-regulated phosphoenolpyruvate carboxykinase pckA [KO:K01596] [EC:4.1.1.32]
TBMG_01739  pyruvate dehydrogenase E1 component aceE [KO:K00163] [EC:1.2.4.1]
TBMG_01766  pyruvate dehydrogenase E2 component sucB [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtb00010  Glycolysis / Gluconeogenesis
mtb00053  Ascorbate and aldarate metabolism
mtb00061  Fatty acid biosynthesis
mtb00071  Fatty acid degradation
mtb00190  Oxidative phosphorylation
mtb00220  Arginine biosynthesis
mtb00250  Alanine, aspartate and glutamate metabolism
mtb00280  Valine, leucine and isoleucine degradation
mtb00350  Tyrosine metabolism
mtb00470  D-Amino acid metabolism
mtb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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