KEGG   PATHWAY: mtec00020
Entry
mtec00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Microbacterium terricola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtec00020  Citrate cycle (TCA cycle)
mtec00020

Module
mtec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtec00020]
mtec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtec00020]
mtec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtec00020]
mtec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtec00020]
mtec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtec00020]
Other DBs
GO: 0006099
Organism
Microbacterium terricola [GN:mtec]
Gene
OAU46_06130  citrate synthase [KO:K01647] [EC:2.3.3.1]
OAU46_08045  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
OAU46_11635  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OAU46_10815  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
OAU46_07950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OAU46_09455  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OAU46_11830  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OAU46_11835  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OAU46_11390  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OAU46_11395  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OAU46_11380  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OAU46_11385  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
OAU46_05870  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OAU46_13785  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OAU46_04270  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
OAU46_09415  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OAU46_11510  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OAU46_13370  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OAU46_07860  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OAU46_07945  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtec00010  Glycolysis / Gluconeogenesis
mtec00053  Ascorbate and aldarate metabolism
mtec00061  Fatty acid biosynthesis
mtec00071  Fatty acid degradation
mtec00190  Oxidative phosphorylation
mtec00220  Arginine biosynthesis
mtec00250  Alanine, aspartate and glutamate metabolism
mtec00280  Valine, leucine and isoleucine degradation
mtec00350  Tyrosine metabolism
mtec00470  D-Amino acid metabolism
mtec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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