KEGG   PATHWAY: mtuh00020
Entry
mtuh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis Haarlem/NITR202
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtuh00020  Citrate cycle (TCA cycle)
mtuh00020

Module
mtuh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtuh00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis Haarlem/NITR202 [GN:mtuh]
Gene
I917_06320  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
I917_00440  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I917_23440  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I917_03315  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I917_17330  ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I917_06710  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
I917_06705  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
I917_01785  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I917_01780  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I917_23320  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
I917_23325  succinate dehydrogenase [KO:K00242]
I917_11010  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00245] [EC:1.3.5.1]
I917_11015  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00246]
I917_11020  fumarate reductase subunit D [KO:K00247]
I917_08815  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I917_19920  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
I917_01520  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
I917_15785  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
I917_15575  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtuh00010  Glycolysis / Gluconeogenesis
mtuh00061  Fatty acid biosynthesis
mtuh00071  Fatty acid degradation
mtuh00190  Oxidative phosphorylation
mtuh00220  Arginine biosynthesis
mtuh00250  Alanine, aspartate and glutamate metabolism
mtuh00280  Valine, leucine and isoleucine degradation
mtuh00350  Tyrosine metabolism
mtuh00470  D-Amino acid metabolism
mtuh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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