KEGG   PATHWAY: mtur00020
Entry
mtur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis CCDC5079
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtur00020  Citrate cycle (TCA cycle)
mtur00020

Module
mtur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtur00020]
mtur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtur00020]
mtur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtur00020]
mtur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtur00020]
mtur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtur00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis CCDC5079 [GN:mtur]
Gene
CFBS_1200  gltA1; citrate synthase [KO:K01647] [EC:2.3.3.1]
CFBS_0935  citA; citrate synthase II [KO:K01647] [EC:2.3.3.1]
CFBS_0942  gltA2; citrate synthase I [KO:K01647] [EC:2.3.3.1]
CFBS_1572  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFBS_0073  icd1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFBS_3537  icd2; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFBS_1328  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CFBS_0480  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFBS_2601  ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CFBS_2600  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CFBS_1002  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CFBS_1001  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CFBS_0265  succinate dehydrogenase iron-sulfur subunit [KO:K00239] [EC:1.3.5.1]
CFBS_3511  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFBS_0264  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFBS_3512  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFBS_3509  sdhC; succinate dehydrogenase cytochrome B-556 subunit SdhC [KO:K00241]
CFBS_3510  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit SdhD [KO:K00242]
CFBS_1655  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CFBS_1656  frdB; fumarate reductase iron-sulfur subunit FrdB [KO:K00245] [EC:1.3.5.1]
CFBS_1657  frdC; fumarate reductase subunit C [KO:K00246]
CFBS_1658  frdD; fumarate reductase subunit D [KO:K00247]
CFBS_1165  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CFBS_1320  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFBS_3007  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFBS_3129  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CFBS_0227  pckA; iron-regulated phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CFBS_2373  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CFBS_2344  dlaT; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtur00010  Glycolysis / Gluconeogenesis
mtur00053  Ascorbate and aldarate metabolism
mtur00061  Fatty acid biosynthesis
mtur00071  Fatty acid degradation
mtur00190  Oxidative phosphorylation
mtur00220  Arginine biosynthesis
mtur00250  Alanine, aspartate and glutamate metabolism
mtur00280  Valine, leucine and isoleucine degradation
mtur00350  Tyrosine metabolism
mtur00470  D-Amino acid metabolism
mtur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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