KEGG   PATHWAY: mun00020
Entry
mun00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Meriones unguiculatus (Mongolian gerbil)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mun00020  Citrate cycle (TCA cycle)
mun00020

Module
mun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mun00020]
mun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mun00020]
mun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mun00020]
mun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mun00020]
mun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mun00020]
Other DBs
GO: 0006099
Organism
Meriones unguiculatus (Mongolian gerbil) [GN:mun]
Gene
110559393  Cs; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110552376  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
110566122  LOW QUALITY PROTEIN: citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
110540730  Acly; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110540316  Aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
110554114  Aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110565063  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
110558679  Idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110563115  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
110552063  Idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110553280  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110560444  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X3 [KO:K00030] [EC:1.1.1.41]
110563435  probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial [KO:K00030] [EC:1.1.1.41]
110546092  Ogdh; 2-oxoglutarate dehydrogenase complex component E1 isoform X2 [KO:K00164] [EC:1.2.4.2]
110561619  Ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
110546966  Dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110558988  Dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110557833  Suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110548915  Suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110553594  Sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110545371  Sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110542105  Sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
110565511  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
110554447  Sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
110562010  Sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
110565969  Fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
110559083  Mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
110555866  Mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110556500  Pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
110556525  Pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
110560872  Pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
110540704  Pdha2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
110540250  Pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
110554623  Pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
110562007  Dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mun00010  Glycolysis / Gluconeogenesis
mun00053  Ascorbate and aldarate metabolism
mun00061  Fatty acid biosynthesis
mun00062  Fatty acid elongation
mun00071  Fatty acid degradation
mun00190  Oxidative phosphorylation
mun00220  Arginine biosynthesis
mun00250  Alanine, aspartate and glutamate metabolism
mun00280  Valine, leucine and isoleucine degradation
mun00350  Tyrosine metabolism
mun00470  D-Amino acid metabolism
mun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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