KEGG   PATHWAY: mxa00020
Entry
mxa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Myxococcus xanthus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mxa00020  Citrate cycle (TCA cycle)
mxa00020

Module
mxa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mxa00020]
mxa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mxa00020]
mxa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mxa00020]
mxa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mxa00020]
Other DBs
GO: 0006099
Organism
Myxococcus xanthus [GN:mxa]
Gene
MXAN_0407  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
MXAN_3519  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MXAN_1363  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
MXAN_3537  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MXAN_6337  putative isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
MXAN_6035  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
MXAN_6036  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MXAN_4219  lpdA; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MXAN_3542  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MXAN_3541  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
MXAN_3539  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MXAN_5224  frdA; fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MXAN_3540  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MXAN_5222  frdB; fumarate reductase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MXAN_1072  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
MXAN_5225  frdC; fumarate reductase, cytochrome b subunit [KO:K00241]
MXAN_3162  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
MXAN_6439  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MXAN_3538  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MXAN_3881  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MXAN_1264  pckG; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MXAN_2666  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, alpha subunit [KO:K00161] [EC:1.2.4.1]
MXAN_2667  pdhB; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, beta subunit [KO:K00162] [EC:1.2.4.1]
MXAN_2668  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
MXAN_4217  alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mxa00010  Glycolysis / Gluconeogenesis
mxa00053  Ascorbate and aldarate metabolism
mxa00061  Fatty acid biosynthesis
mxa00071  Fatty acid degradation
mxa00190  Oxidative phosphorylation
mxa00220  Arginine biosynthesis
mxa00250  Alanine, aspartate and glutamate metabolism
mxa00280  Valine, leucine and isoleucine degradation
mxa00350  Tyrosine metabolism
mxa00470  D-Amino acid metabolism
mxa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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