KEGG   PATHWAY: myu00020
Entry
myu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Micrococcus yunnanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
myu00020  Citrate cycle (TCA cycle)
myu00020

Module
myu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:myu00020]
myu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:myu00020]
myu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:myu00020]
myu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:myu00020]
myu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:myu00020]
Other DBs
GO: 0006099
Organism
Micrococcus yunnanensis [GN:myu]
Gene
M8233_06800  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
M8233_07405  citrate synthase [KO:K01647] [EC:2.3.3.1]
M8233_06245  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
M8233_02045  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M8233_03595  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
M8233_06385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M8233_01895  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M8233_01890  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M8233_07590  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
M8233_02190  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M8233_02185  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M8233_02200  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M8233_02195  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
M8233_02360  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M8233_00195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M8233_03950  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M8233_06630  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
M8233_01515  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
M8233_04355  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
M8233_06390  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
myu00010  Glycolysis / Gluconeogenesis
myu00053  Ascorbate and aldarate metabolism
myu00061  Fatty acid biosynthesis
myu00071  Fatty acid degradation
myu00190  Oxidative phosphorylation
myu00220  Arginine biosynthesis
myu00250  Alanine, aspartate and glutamate metabolism
myu00280  Valine, leucine and isoleucine degradation
myu00350  Tyrosine metabolism
myu00470  D-Amino acid metabolism
myu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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