KEGG   PATHWAY: naf00020
Entry
naf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nucleicultrix amoebiphila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
naf00020  Citrate cycle (TCA cycle)
naf00020

Module
naf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:naf00020]
naf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:naf00020]
naf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:naf00020]
Other DBs
GO: 0006099
Organism
Candidatus Nucleicultrix amoebiphila [GN:naf]
Gene
GQ61_00660  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
GQ61_00680  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GQ61_04800  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GQ61_00460  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
GQ61_00465  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GQ61_00470  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GQ61_08875  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GQ61_00455  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
GQ61_00450  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
GQ61_07790  fumarate reductase [KO:K00239] [EC:1.3.5.1]
GQ61_07795  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GQ61_07780  succinate dehydrogenase [KO:K00241]
GQ61_03470  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GQ61_00445  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GQ61_02800  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
GQ61_02795  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
naf00010  Glycolysis / Gluconeogenesis
naf00053  Ascorbate and aldarate metabolism
naf00061  Fatty acid biosynthesis
naf00071  Fatty acid degradation
naf00190  Oxidative phosphorylation
naf00220  Arginine biosynthesis
naf00250  Alanine, aspartate and glutamate metabolism
naf00280  Valine, leucine and isoleucine degradation
naf00350  Tyrosine metabolism
naf00470  D-Amino acid metabolism
naf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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