KEGG   PATHWAY: nau00630
Entry
nau00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nicotiana attenuata (coyote tobacco)
Class
Metabolism; Carbohydrate metabolism
Pathway map
nau00630  Glyoxylate and dicarboxylate metabolism
nau00630

Module
nau_M00012  Glyoxylate cycle [PATH:nau00630]
nau_M00532  Photorespiration [PATH:nau00630]
nau_M00621  Glycine cleavage system [PATH:nau00630]
Other DBs
GO: 0046487 0043648
Organism
Nicotiana attenuata (coyote tobacco) [GN:nau]
Gene
109228739  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
109205476  isocitrate lyase-like isoform X1 [KO:K01637] [EC:4.1.3.1]
109228460  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
109242942  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
109232129  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
109241295  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
109239293  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
109237246  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
109239064  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
109220558  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
109221966  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
109213586  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
109211238  malate dehydrogenase, chloroplastic isoform X1 [KO:K00026] [EC:1.1.1.37]
109230769  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
109211734  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
109226664  malate dehydrogenase 2, mitochondrial [KO:K00026] [EC:1.1.1.37]
109232416  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
109210575  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109238533  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
109229331  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109209184  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
109229005  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
109205684  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
109228626  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
109211968  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
109241439  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
109241440  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
109206744  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
109241910  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
109241441  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
109230705  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
109229256  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
109224807  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
109232204  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
109207119  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
109212869  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
109212377  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
109218347  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
109218346  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
109218348  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
109212737  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
109236362  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
109237485  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
109216892  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
109225887  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
109218023  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
109220728  uncharacterized protein LOC109220728 [KO:K01601] [EC:4.1.1.39]
109231677  uncharacterized protein LOC109231677 [KO:K01601] [EC:4.1.1.39]
34583124  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
109210569  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
109228596  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
109221531  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
109221532  ribulose bisphosphate carboxylase small chain S41, chloroplastic [KO:K01602] [EC:4.1.1.39]
109207103  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
109207104  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
109233078  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
109221948  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
109213708  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
109209329  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
109233296  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
109223546  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
109220189  glutamine synthetase isoform X1 [KO:K01915] [EC:6.3.1.2]
109206023  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
109206151  glutamine synthetase cytosolic isozyme 1-1-like isoform X1 [KO:K01915] [EC:6.3.1.2]
109215123  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
109209412  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
109236558  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
109229387  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
109238547  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
109235679  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
109235697  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
109206582  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
109205248  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
109216637  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
109231409  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
109231042  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
109235719  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109222903  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
109233010  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
109225144  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109225151  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
109205895  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
109207057  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
109233434  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
109209638  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
109231150  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
109206919  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
109227179  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
109244417  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
109208879  uncharacterized protein LOC109208879 isoform X1 [KO:K01455] [EC:3.5.1.49]
109214614  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
109225826  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nau00010  Glycolysis / Gluconeogenesis
nau00020  Citrate cycle (TCA cycle)
nau00030  Pentose phosphate pathway
nau00053  Ascorbate and aldarate metabolism
nau00071  Fatty acid degradation
nau00230  Purine metabolism
nau00250  Alanine, aspartate and glutamate metabolism
nau00260  Glycine, serine and threonine metabolism
nau00620  Pyruvate metabolism
nau00710  Carbon fixation by Calvin cycle
nau00750  Vitamin B6 metabolism
nau00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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