KEGG   PATHWAY: nau00020
Entry
nau00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nicotiana attenuata (coyote tobacco)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nau00020  Citrate cycle (TCA cycle)
nau00020

Module
nau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nau00020]
nau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nau00020]
nau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nau00020]
nau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nau00020]
nau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nau00020]
Other DBs
GO: 0006099
Organism
Nicotiana attenuata (coyote tobacco) [GN:nau]
Gene
109210575  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109238533  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
109235726  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
109232143  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
109212879  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
109214236  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
109217782  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
109229331  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109209184  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
109229005  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
109223985  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
109238321  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
109226565  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
109206363  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
109210234  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109234471  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
109212875  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
109221504  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
109233001  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
109240186  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109238819  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
109235719  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109222903  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
109233010  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
109225144  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109225151  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
109228418  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109213757  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109227540  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109222518  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109229262  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109244493  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
109241329  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
109226550  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
35198936  sdh3; succinate dehydrogenase subunit 4 [KO:K00236]
35198956  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
109235264  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
109235381  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
109237246  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
109239064  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
109220558  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
109221966  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
109213586  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
109211238  malate dehydrogenase, chloroplastic isoform X1 [KO:K00026] [EC:1.1.1.37]
109230769  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
109211734  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
109226664  malate dehydrogenase 2, mitochondrial [KO:K00026] [EC:1.1.1.37]
109232416  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
109213845  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
109233069  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
109244821  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
109228543  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
109208645  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
109208647  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
109207587  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
109242333  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
109243559  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
109226902  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
109231407  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
109216613  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
109242387  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
109243578  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
109232062  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
109226564  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
109234602  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
109226919  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nau00010  Glycolysis / Gluconeogenesis
nau00053  Ascorbate and aldarate metabolism
nau00061  Fatty acid biosynthesis
nau00062  Fatty acid elongation
nau00071  Fatty acid degradation
nau00190  Oxidative phosphorylation
nau00220  Arginine biosynthesis
nau00250  Alanine, aspartate and glutamate metabolism
nau00280  Valine, leucine and isoleucine degradation
nau00350  Tyrosine metabolism
nau00470  D-Amino acid metabolism
nau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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