KEGG   PATHWAY: nck00020
Entry
nck00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitrosotenuis chungbukensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nck00020  Citrate cycle (TCA cycle)
nck00020

Other DBs
GO: 0006099
Organism
Candidatus Nitrosotenuis chungbukensis [GN:nck]
Gene
QVH35_10580  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
QVH35_06040  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QVH35_10840  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QVH35_01490  2Fe-2S iron-sulfur cluster-binding protein [KO:K00240] [EC:1.3.5.1]
QVH35_01500  succinate dehydrogenase [KO:K00241]
QVH35_04590  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QVH35_05630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nck00010  Glycolysis / Gluconeogenesis
nck00061  Fatty acid biosynthesis
nck00071  Fatty acid degradation
nck00190  Oxidative phosphorylation
nck00220  Arginine biosynthesis
nck00250  Alanine, aspartate and glutamate metabolism
nck00280  Valine, leucine and isoleucine degradation
nck00350  Tyrosine metabolism
nck00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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