KEGG   PATHWAY: nde00010
Entry
nde00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Nitrospira defluvii
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nde00010  Glycolysis / Gluconeogenesis
nde00010

Module
nde_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:nde00010]
nde_M00002  Glycolysis, core module involving three-carbon compounds [PATH:nde00010]
nde_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nde00010]
Other DBs
GO: 0006096 0006094
Organism
Nitrospira defluvii [GN:nde]
Gene
NIDE0354  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
NIDE0356  putative Glucose-6-phosphate isomerase (modular protein) [KO:K01810] [EC:5.3.1.9]
NIDE4287  putative 6-phosphofructokinase (modular protein) [KO:K00850] [EC:2.7.1.11]
NIDE3182  pfkA; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
NIDE2981  fbp; Fructose-1-6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
NIDE2980  fbaB; Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
NIDE2031  fbpV; Fructose-1,6-bisphosphatase, class V [KO:K01622] [EC:4.1.2.13 3.1.3.11]
NIDE1105  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
NIDE1107  gapA; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
NIDE1106  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
NIDE0478  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
NIDE4112  apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15635] [EC:5.4.2.12]
NIDE2913  eno; Enolase [KO:K01689] [EC:4.2.1.11]
NIDE2807  pykF; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
NIDE4286  pykA; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
NIDE1634  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
NIDE3852  pdhA; Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
NIDE3953  pdhA; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, alpha subunit (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
NIDE3853  pdhB; Pyruvate dehydrogenase E1 component, beta subunit (Transketolase) [KO:K00162] [EC:1.2.4.1]
NIDE3952  pdhB; Dehydrogenase (E1) component of pyruvate dehydrogenase complex, beta subunit (Transketolase) [KO:K00162] [EC:1.2.4.1]
NIDE3854  putative Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
NIDE3951  pdhC; Dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
NIDE2727  lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
NIDE0827  forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit [KO:K00169] [EC:1.2.7.1]
NIDE0971  porA; Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
NIDE3874  vorA; 2-ketoisovalerate ferredoxin reductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NIDE1465  forB2; 2-oxoacid:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
NIDE0823  forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit [KO:K00170] [EC:1.2.7.1]
NIDE0970  porB; Pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
NIDE3873  vorB; 2-ketoisovalerate ferredoxin reductase, beta subunit [KO:K00170] [EC:1.2.7.1]
NIDE1464  porB2-C; partial 2-oxoacid:ferredoxin oxidoreductase beta subunit (fragment C-terminal) [KO:K00170] [EC:1.2.7.1]
NIDE3875  vorCD; 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit [KO:K00172] [EC:1.2.7.1]
NIDE0969  porC; Pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
NIDE0824  forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit [KO:K00172] [EC:1.2.7.1]
NIDE0968  porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit [KO:K00171] [EC:1.2.7.1]
NIDE4251  adhC; Alcohol dehydrogenase, NADP-dependent [KO:K13979] [EC:1.1.1.2]
NIDE1643  acsA; Acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NIDE3851  acsA; Acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
NIDE3866  putative Acyl-CoA synthetase (NDP forming) [KO:K24012] [EC:6.2.1.13]
NIDE3181  putative Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
NIDE2083  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
NIDE2983  manB_pgm; bifunctional Phosphoglucomutase/Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nde00020  Citrate cycle (TCA cycle)
nde00030  Pentose phosphate pathway
nde00500  Starch and sucrose metabolism
nde00620  Pyruvate metabolism
nde00640  Propanoate metabolism
nde00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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