KEGG   PATHWAY: nif00010
Entry
nif00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Nitrospira sp. KM1
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nif00010  Glycolysis / Gluconeogenesis
nif00010

Module
nif_M00002  Glycolysis, core module involving three-carbon compounds [PATH:nif00010]
nif_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nif00010]
Other DBs
GO: 0006096 0006094
Organism
Nitrospira sp. KM1 [GN:nif]
Gene
W02_26130  glk; Glucokinase [KO:K00845] [EC:2.7.1.2]
W02_02040  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
W02_13320  fbp; Fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
W02_13310  fbaB; Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
W02_33720  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
W02_33740  gapA; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
W02_33730  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
W02_27640  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
W02_12980  eno; Enolase [KO:K01689] [EC:4.2.1.11]
W02_34170  pykA; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
W02_11340  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
W02_35580  pdhA; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
W02_35570  aceF; Pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase E2 component [KO:K00627] [EC:2.3.1.12]
W02_35560  lpd; Dihydrolipoyl dehydrogenase, E3 component [KO:K00382] [EC:1.8.1.4]
W02_30230  forA; Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
W02_32440  porA; Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
W02_30190  forB; 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
W02_32430  porB; Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
W02_30200  forC; 2-oxoglutarate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
W02_32420  porC; Pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
W02_32410  porE; Pyruvate:ferredoxin oxidoreductase epsilon subunit [KO:K00171] [EC:1.2.7.1]
W02_22020  adh; Alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
W02_09420  adhC; Alcohol dehydrogenase, NADP-dependent [KO:K13979] [EC:1.1.1.2]
W02_11260  acsA; Acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
W02_06420  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
W02_13340  manB_pgm; bifunctional Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nif00020  Citrate cycle (TCA cycle)
nif00030  Pentose phosphate pathway
nif00500  Starch and sucrose metabolism
nif00620  Pyruvate metabolism
nif00640  Propanoate metabolism
nif00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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