KEGG   PATHWAY: nio00020
Entry
nio00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitrospira inopinata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nio00020  Citrate cycle (TCA cycle)
nio00020

Module
nio_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nio00020]
nio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nio00020]
Other DBs
GO: 0006099
Organism
Candidatus Nitrospira inopinata [GN:nio]
Gene
NITINOP_2323  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NITINOP_0227  aclA; ATP citrate lyase, alpha subunit [KO:K15230] [EC:2.3.3.8]
NITINOP_0228  aclB; ATP-citrate lyase, beta subunit [KO:K15231] [EC:2.3.3.8]
NITINOP_0226  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NITINOP_0225  idh; Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
NITINOP_1478  Isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
NITINOP_2493  lpd; Dihydrolipoyl dehydrogenase, E3 component of Pyruvate and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
NITINOP_0221  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
NITINOP_0222  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
NITINOP_1451  sdhA; Succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NITINOP_1452  sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
NITINOP_1450  sdhC; Succinate dehydrogenase/fumarate reductase, cytochrome b558 subunit [KO:K00241]
NITINOP_2197  fumC; Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NITINOP_0980  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NITINOP_2205  pycB; Pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
NITINOP_1630  porA; Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NITINOP_0238  forA; 2-oxoglutarate:ferredoxin oxidoredutase alpha subunit [KO:K00169] [EC:1.2.7.1]
NITINOP_1629  porB; Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
NITINOP_0242  forB; 2-oxoglutarate:ferredoxin oxidoredutase beta subunit [KO:K00170] [EC:1.2.7.1]
NITINOP_1628  porC; Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
NITINOP_0241  forC; 2-oxoglutarate:ferredoxin oxidoredutase gamma subunit [KO:K00172] [EC:1.2.7.1]
NITINOP_1627  porE; Pyruvate:ferredoxin oxidoreductase, epsilon subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nio00010  Glycolysis / Gluconeogenesis
nio00053  Ascorbate and aldarate metabolism
nio00061  Fatty acid biosynthesis
nio00071  Fatty acid degradation
nio00190  Oxidative phosphorylation
nio00220  Arginine biosynthesis
nio00250  Alanine, aspartate and glutamate metabolism
nio00280  Valine, leucine and isoleucine degradation
nio00350  Tyrosine metabolism
nio00470  D-Amino acid metabolism
nio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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