KEGG   PATHWAY: nlu00020
Entry
nlu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nilaparvata lugens (brown planthopper)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nlu00020  Citrate cycle (TCA cycle)
nlu00020

Module
nlu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nlu00020]
nlu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nlu00020]
nlu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nlu00020]
nlu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nlu00020]
nlu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nlu00020]
Other DBs
GO: 0006099
Organism
Nilaparvata lugens (brown planthopper) [GN:nlu]
Gene
111052457  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
111048221  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
111064425  probable aconitate hydratase, mitochondrial isoform X2 [KO:K01681] [EC:4.2.1.3]
111044390  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
120355889  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
111053490  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
111057518  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
111063061  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111063801  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111064356  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
111052134  isocitrate dehydrogenase [NAD] subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
111052492  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111046263  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
111049140  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
111049146  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
111049584  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
111059050  dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
111050731  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111053016  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111053168  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120354013  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111046062  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111058219  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111053513  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
111043388  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
120348872  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
111046154  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
120351293  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like isoform X1 [KO:K00237]
111046288  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
111059684  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
111059929  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111049817  malate dehydrogenase isoform X1 [KO:K00026] [EC:1.1.1.37]
111050950  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
111045253  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111057712  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111059250  pyruvate carboxylase 1 isoform X1 [KO:K01958] [EC:6.4.1.1]
111058636  phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
111050807  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120348807  pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111046252  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
111046667  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial [KO:K00161] [EC:1.2.4.1]
111062395  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
120354930  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111044848  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
111062433  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
111051316  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
120355221  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [KO:K00627] [EC:2.3.1.12]
111055142  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nlu00010  Glycolysis / Gluconeogenesis
nlu00053  Ascorbate and aldarate metabolism
nlu00061  Fatty acid biosynthesis
nlu00062  Fatty acid elongation
nlu00071  Fatty acid degradation
nlu00190  Oxidative phosphorylation
nlu00220  Arginine biosynthesis
nlu00250  Alanine, aspartate and glutamate metabolism
nlu00280  Valine, leucine and isoleucine degradation
nlu00350  Tyrosine metabolism
nlu00470  D-Amino acid metabolism
nlu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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