KEGG   PATHWAY: nnu00020
Entry
nnu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nelumbo nucifera (sacred lotus)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nnu00020  Citrate cycle (TCA cycle)
nnu00020

Module
nnu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nnu00020]
nnu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nnu00020]
nnu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nnu00020]
nnu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nnu00020]
nnu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nnu00020]
Other DBs
GO: 0006099
Organism
Nelumbo nucifera (sacred lotus) [GN:nnu]
Gene
104603546  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
104609004  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
104591421  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
104593159  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
104598755  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
104605046  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
104611252  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
104607114  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
104604302  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
104610937  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
104612799  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
104591424  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104599821  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104593346  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104599244  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104599192  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104603177  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
104601278  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104599289  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104602773  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104608852  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104611994  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104598431  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
104596619  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
104588306  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
104593916  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
104593915  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
104598802  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
104605099  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
104586082  probable succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
104600926  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104602835  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104595705  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
104601877  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
104607007  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
28482709  sdh3a; succinate dehydrogenase subunit 3 [KO:K00236]
28482651  sdh3b; succinate dehydrogenase subunit 3 [KO:K00236]
28482693  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
104598878  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
104589001  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
104600872  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
104602371  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
104610015  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
104605538  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
104607582  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
104610142  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
104612123  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104613084  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
104595577  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
104610545  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
104593397  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
104596102  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
104607993  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
104591799  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
104592796  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
104605406  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
104590786  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
104601757  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
104587351  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
104596764  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
104600658  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
104586674  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nnu00010  Glycolysis / Gluconeogenesis
nnu00053  Ascorbate and aldarate metabolism
nnu00061  Fatty acid biosynthesis
nnu00062  Fatty acid elongation
nnu00071  Fatty acid degradation
nnu00190  Oxidative phosphorylation
nnu00220  Arginine biosynthesis
nnu00250  Alanine, aspartate and glutamate metabolism
nnu00280  Valine, leucine and isoleucine degradation
nnu00350  Tyrosine metabolism
nnu00470  D-Amino acid metabolism
nnu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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