KEGG   PATHWAY: nnv00020
Entry
nnv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neobacillus novalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nnv00020  Citrate cycle (TCA cycle)
nnv00020

Module
nnv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nnv00020]
nnv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nnv00020]
nnv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nnv00020]
nnv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nnv00020]
nnv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nnv00020]
Other DBs
GO: 0006099
Organism
Neobacillus novalis [GN:nnv]
Gene
QNH39_20280  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
QNH39_05375  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
QNH39_13535  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QNH39_20275  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QNH39_16545  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QNH39_16540  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QNH39_18125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QNH39_08880  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QNH39_09910  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QNH39_07170  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QNH39_09915  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QNH39_07175  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QNH39_07180  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
QNH39_07165  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
QNH39_09630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QNH39_09625  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QNH39_20040  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QNH39_20035  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QNH39_20045  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
QNH39_06325  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QNH39_07400  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QNH39_20270  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QNH39_12950  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
QNH39_20795  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QNH39_08865  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QNH39_08870  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
QNH39_08875  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
QNH39_08585  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
QNH39_14220  thiamine pyrophosphate-dependent enzyme [KO:K00169] [EC:1.2.7.1]
QNH39_14215  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
QNH39_08580  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nnv00010  Glycolysis / Gluconeogenesis
nnv00053  Ascorbate and aldarate metabolism
nnv00061  Fatty acid biosynthesis
nnv00071  Fatty acid degradation
nnv00190  Oxidative phosphorylation
nnv00220  Arginine biosynthesis
nnv00250  Alanine, aspartate and glutamate metabolism
nnv00280  Valine, leucine and isoleucine degradation
nnv00350  Tyrosine metabolism
nnv00470  D-Amino acid metabolism
nnv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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