KEGG   PATHWAY: noj00020
Entry
noj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nonlabens ponticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
noj00020  Citrate cycle (TCA cycle)
noj00020

Module
noj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:noj00020]
noj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:noj00020]
noj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:noj00020]
noj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:noj00020]
noj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:noj00020]
Other DBs
GO: 0006099
Organism
Nonlabens ponticola [GN:noj]
Gene
EJ995_12320  citrate synthase [KO:K01647] [EC:2.3.3.1]
EJ995_11920  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EJ995_11270  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EJ995_01295  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EJ995_05345  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
EJ995_06065  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
EJ995_01290  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EJ995_10870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJ995_05925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJ995_09205  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EJ995_09290  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EJ995_02160  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EJ995_02165  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EJ995_02155  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EJ995_09085  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EJ995_05465  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EJ995_01085  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EJ995_05045  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EJ995_04070  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
EJ995_05050  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
noj00010  Glycolysis / Gluconeogenesis
noj00053  Ascorbate and aldarate metabolism
noj00061  Fatty acid biosynthesis
noj00071  Fatty acid degradation
noj00190  Oxidative phosphorylation
noj00220  Arginine biosynthesis
noj00250  Alanine, aspartate and glutamate metabolism
noj00280  Valine, leucine and isoleucine degradation
noj00350  Tyrosine metabolism
noj00470  D-Amino acid metabolism
noj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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