KEGG   PATHWAY: npp00630
Entry
npp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Novosphingobium sp. PP1Y
Class
Metabolism; Carbohydrate metabolism
Pathway map
npp00630  Glyoxylate and dicarboxylate metabolism
npp00630

Module
npp_M00012  Glyoxylate cycle [PATH:npp00630]
npp_M00621  Glycine cleavage system [PATH:npp00630]
npp_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:npp00630]
Other DBs
GO: 0046487 0043648
Organism
Novosphingobium sp. PP1Y [GN:npp]
Gene
PP1Y_AT18131  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PP1Y_AT25829  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PP1Y_AT20390  malate synthase [KO:K01638] [EC:2.3.3.9]
PP1Y_AT17313  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PP1Y_AT27179  citrate synthase [KO:K01647] [EC:2.3.3.1]
PP1Y_AT35121  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PP1Y_AT11916  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PP1Y_AT27433  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_Mpl2944  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_Mpl2994  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_AT31387  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_AT31984  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_AT29734  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_AT12778  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PP1Y_AT785  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PP1Y_Lpl1399  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
PP1Y_AT29728  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PP1Y_AT31373  acyl-CoA dehydrogenase-like protein [KO:K14448] [EC:1.3.8.12]
PP1Y_AT31999  acyl-CoA dehydrogenase-like protein [KO:K14448] [EC:1.3.8.12]
PP1Y_AT29672  propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
PP1Y_AT29745  propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PP1Y_AT29712  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
PP1Y_AT24846  catalase [KO:K03781] [EC:1.11.1.6]
PP1Y_AT27451  glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
PP1Y_Mpl4039  gyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PP1Y_AT20626  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PP1Y_AT18954  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
PP1Y_AT5538  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PP1Y_AT24830  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PP1Y_AT27955  glycine dehydrogenase subunit 1 [KO:K00282] [EC:1.4.4.2]
PP1Y_AT27936  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
PP1Y_AT27970  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
PP1Y_AT17260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PP1Y_AT25757  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PP1Y_AT27967  glycine cleavage system protein H [KO:K02437]
PP1Y_Mpl7589  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PP1Y_AT5321  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
PP1Y_AT25020  kinase-like protein [KO:K15918] [EC:2.7.1.31]
PP1Y_AT31145  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PP1Y_Mpl4131  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PP1Y_AT16065  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PP1Y_AT6922  2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PP1Y_AT21411  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
PP1Y_AT21382  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
PP1Y_AT21369  NADH dehydrogenase (quinone) [KO:K00124]
PP1Y_AT21359  formate dehydrogenase, gamma subunit [KO:K00127]
PP1Y_AT33582  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PP1Y_Mpl6662  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PP1Y_AT17591  formiminoglutamase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
npp00010  Glycolysis / Gluconeogenesis
npp00020  Citrate cycle (TCA cycle)
npp00030  Pentose phosphate pathway
npp00053  Ascorbate and aldarate metabolism
npp00071  Fatty acid degradation
npp00230  Purine metabolism
npp00250  Alanine, aspartate and glutamate metabolism
npp00260  Glycine, serine and threonine metabolism
npp00620  Pyruvate metabolism
npp00710  Carbon fixation by Calvin cycle
npp00750  Vitamin B6 metabolism
npp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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