KEGG   PATHWAY: nri00020
Entry
nri00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neorickettsia risticii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nri00020  Citrate cycle (TCA cycle)
nri00020

Module
nri_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nri00020]
nri_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nri00020]
nri_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nri00020]
nri_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nri00020]
Other DBs
GO: 0006099
Organism
Neorickettsia risticii [GN:nri]
Gene
NRI_0705  citrate synthase [KO:K01647] [EC:2.3.3.1]
NRI_0573  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NRI_0168  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NRI_0553  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
NRI_0525  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
NRI_0438  lpdA-1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NRI_0648  lpdA-2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NRI_0241  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NRI_0242  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
NRI_0359  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NRI_0360  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NRI_0511  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NRI_0045  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NRI_0054  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NRI_0913  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NRI_0768  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
NRI_0720  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
NRI_0910  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nri00010  Glycolysis / Gluconeogenesis
nri00061  Fatty acid biosynthesis
nri00190  Oxidative phosphorylation
nri00220  Arginine biosynthesis
nri00250  Alanine, aspartate and glutamate metabolism
nri00280  Valine, leucine and isoleucine degradation
nri00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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