KEGG   PATHWAY: nspu00020
Entry
nspu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Nocardia sputorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nspu00020  Citrate cycle (TCA cycle)
nspu00020

Module
nspu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nspu00020]
nspu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nspu00020]
nspu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nspu00020]
nspu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nspu00020]
nspu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nspu00020]
Other DBs
GO: 0006099
Organism
Nocardia sputorum [GN:nspu]
Gene
IFM12276_04010  citrate synthase [KO:K01647] [EC:2.3.3.1]
IFM12276_04040  citrate synthase [KO:K01647] [EC:2.3.3.1]
IFM12276_14550  citrate synthase [KO:K01647] [EC:2.3.3.1]
IFM12276_21220  acnA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
IFM12276_53830  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
IFM12276_08670  putative 2-oxoglutarate dehydrogenase SucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IFM12276_29780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFM12276_58840  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFM12276_19240  putative ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IFM12276_19230  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IFM12276_05460  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
IFM12276_05450  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
IFM12276_53480  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IFM12276_62980  putative succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IFM12276_53490  putative succinate dehydrogenase SdhB [KO:K00240] [EC:1.3.5.1]
IFM12276_62990  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IFM12276_53460  putative succinate dehydrogenase, cytochrome b-556 subunit SdhC [KO:K00241]
IFM12276_53470  sdhD; succinate dehydrogenase [KO:K00242]
IFM12276_22340  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
IFM12276_07200  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
IFM12276_19220  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IFM12276_15990  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IFM12276_14580  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IFM12276_61330  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
IFM12276_46250  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
IFM12276_29770  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IFM12276_29760  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
IFM12276_29750  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
IFM12276_45300  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nspu00010  Glycolysis / Gluconeogenesis
nspu00053  Ascorbate and aldarate metabolism
nspu00061  Fatty acid biosynthesis
nspu00071  Fatty acid degradation
nspu00190  Oxidative phosphorylation
nspu00220  Arginine biosynthesis
nspu00250  Alanine, aspartate and glutamate metabolism
nspu00280  Valine, leucine and isoleucine degradation
nspu00350  Tyrosine metabolism
nspu00470  D-Amino acid metabolism
nspu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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