KEGG   PATHWAY: nti00030
Entry
nti00030                    Pathway                                
Name
Pentose phosphate pathway - Nitrospira tepida
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nti00030  Pentose phosphate pathway
nti00030

Module
nti_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:nti00030]
nti_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:nti00030]
nti_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:nti00030]
nti_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:nti00030]
Other DBs
GO: 0006098
Organism
Nitrospira tepida [GN:nti]
Gene
DNFV4_02541  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DNFV4_01905  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DNFV4_02574  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DNFV4_03784  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DNFV4_00556  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
DNFV4_02575  6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DNFV4_00613  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DNFV4_02781  Transketolase [KO:K00615] [EC:2.2.1.1]
DNFV4_00027  Transketolase [KO:K00615] [EC:2.2.1.1]
DNFV4_00766  putative transaldolase [KO:K00616] [EC:2.2.1.2]
DNFV4_01218  Transaldolase [KO:K00616] [EC:2.2.1.2]
DNFV4_00554  Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
DNFV4_02540  putative phosphoketolase 1 [KO:K01621] [EC:4.1.2.9 4.1.2.22]
DNFV4_02189  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
DNFV4_00503  Ribokinase [KO:K00852] [EC:2.7.1.15]
DNFV4_02190  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
DNFV4_04003  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
DNFV4_03082  Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
DNFV4_01049  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
DNFV4_01461  Glucose 1-dehydrogenase [KO:K22969] [EC:1.1.1.47]
DNFV4_01417  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
DNFV4_01420  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
DNFV4_03510  Gluconokinase [KO:K00851] [EC:2.7.1.12]
DNFV4_00763  Glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
DNFV4_03078  Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
DNFV4_04280  Fructose-1,6-bisphosphate aldolase/phosphatase [KO:K01622] [EC:4.1.2.13 3.1.3.11]
DNFV4_03079  fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
DNFV4_02538  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
DNFV4_04279  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
nti00010  Glycolysis / Gluconeogenesis
nti00040  Pentose and glucuronate interconversions
nti00052  Galactose metabolism
nti00230  Purine metabolism
nti00240  Pyrimidine metabolism
nti00340  Histidine metabolism
nti00630  Glyoxylate and dicarboxylate metabolism
nti00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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