KEGG   PATHWAY: nto00020
Entry
nto00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nicotiana tomentosiformis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nto00020  Citrate cycle (TCA cycle)
nto00020

Module
nto_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nto00020]
nto_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nto00020]
nto_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nto00020]
Other DBs
GO: 0006099
Organism
Nicotiana tomentosiformis [GN:nto]
Gene
104114264  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
104092509  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
104094197  ATP-citrate synthase alpha chain protein 2 isoform X1 [KO:K01648] [EC:2.3.3.8]
104119401  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
104114383  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
104089256  ATP-citrate synthase beta chain protein 2 isoform X1 [KO:K01648] [EC:2.3.3.8]
104097957  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
104094164  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
104095241  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
104096652  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
104116313  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104115653  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104121153  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
104084987  3-isopropylmalate dehydrogenase, chloroplastic [KO:K00030] [EC:1.1.1.41]
104087001  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104117338  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
104099916  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
104095375  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104116207  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
104100129  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [KO:K00658] [EC:2.3.1.61]
104095322  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
104091597  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104102072  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
104090358  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
104087490  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
104098841  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
104100660  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
104114597  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
104113124  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104115838  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
104094952  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
104094658  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
104113632  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
104119297  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
104097607  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
104096678  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
104090176  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104104732  malate dehydrogenase 2, mitochondrial [KO:K00026] [EC:1.1.1.37]
104107636  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
104109279  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
104100236  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
104115970  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
104114734  phosphoenolpyruvate carboxykinase [ATP]-like isoform X1 [KO:K01610] [EC:4.1.1.49]
104098342  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
104115119  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
104087631  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
104106010  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
104113919  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
104089851  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
104108270  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
104106177  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
104120301  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
104115510  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
104119381  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like isoform X1 [KO:K00627] [EC:2.3.1.12]
104097323  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
104108652  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
104114888  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
104121152  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
104098084  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nto00010  Glycolysis / Gluconeogenesis
nto00053  Ascorbate and aldarate metabolism
nto00061  Fatty acid biosynthesis
nto00062  Fatty acid elongation
nto00071  Fatty acid degradation
nto00190  Oxidative phosphorylation
nto00220  Arginine biosynthesis
nto00250  Alanine, aspartate and glutamate metabolism
nto00280  Valine, leucine and isoleucine degradation
nto00350  Tyrosine metabolism
nto00470  D-Amino acid metabolism
nto00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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