KEGG   PATHWAY: ntx00020
Entry
ntx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Niallia taxi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ntx00020  Citrate cycle (TCA cycle)
ntx00020

Module
ntx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ntx00020]
ntx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ntx00020]
ntx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ntx00020]
ntx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ntx00020]
Other DBs
GO: 0006099
Organism
Niallia taxi [GN:ntx]
Gene
NQZ71_07040  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
NQZ71_12875  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NQZ71_07045  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQZ71_12685  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NQZ71_12680  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NQZ71_08795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_11450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_15580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_14965  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NQZ71_14970  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NQZ71_07245  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NQZ71_07250  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NQZ71_07240  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
NQZ71_18800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NQZ71_10375  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NQZ71_07050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NQZ71_13440  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NQZ71_15595  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NQZ71_15590  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NQZ71_11445  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NQZ71_15585  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ntx00010  Glycolysis / Gluconeogenesis
ntx00053  Ascorbate and aldarate metabolism
ntx00061  Fatty acid biosynthesis
ntx00062  Fatty acid elongation
ntx00071  Fatty acid degradation
ntx00190  Oxidative phosphorylation
ntx00220  Arginine biosynthesis
ntx00250  Alanine, aspartate and glutamate metabolism
ntx00280  Valine, leucine and isoleucine degradation
ntx00350  Tyrosine metabolism
ntx00470  D-Amino acid metabolism
ntx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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