KEGG   PATHWAY: nwh00020
Entry
nwh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nematolebias whitei (Rio pearlfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nwh00020  Citrate cycle (TCA cycle)
nwh00020

Module
nwh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nwh00020]
nwh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nwh00020]
nwh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nwh00020]
nwh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nwh00020]
nwh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nwh00020]
Other DBs
GO: 0006099
Organism
Nematolebias whitei (Rio pearlfish) [GN:nwh]
Gene
119417469  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
119421901  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
119424004  aclyb; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
119421529  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119407982  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
119424241  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119426243  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
119416290  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
119419302  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119416444  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119416977  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
119412249  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
119430297  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119413767  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
119424663  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
119427894  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
119415376  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
119408094  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119411706  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119419329  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119409524  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
119417143  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119412494  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119414796  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
119411060  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
119430663  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
119422616  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119414101  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119414112  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119410192  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
119409659  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
119426665  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
119412717  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
119426615  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b [KO:K00161] [EC:1.2.4.1]
119420060  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
119412701  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
119420587  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nwh00010  Glycolysis / Gluconeogenesis
nwh00053  Ascorbate and aldarate metabolism
nwh00061  Fatty acid biosynthesis
nwh00062  Fatty acid elongation
nwh00071  Fatty acid degradation
nwh00190  Oxidative phosphorylation
nwh00220  Arginine biosynthesis
nwh00250  Alanine, aspartate and glutamate metabolism
nwh00280  Valine, leucine and isoleucine degradation
nwh00350  Tyrosine metabolism
nwh00470  D-Amino acid metabolism
nwh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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