KEGG   PATHWAY: nya00630
Entry
nya00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardia yamanashiensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
nya00630  Glyoxylate and dicarboxylate metabolism
nya00630

Module
nya_M00012  Glyoxylate cycle [PATH:nya00630]
nya_M00621  Glycine cleavage system [PATH:nya00630]
nya_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nya00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardia yamanashiensis [GN:nya]
Gene
LTV02_24970  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LTV02_34755  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LTV02_19205  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LTV02_23480  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LTV02_29585  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LTV02_14255  malate synthase G [KO:K01638] [EC:2.3.3.9]
LTV02_06360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LTV02_01080  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
LTV02_27920  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
LTV02_27935  citrate synthase [KO:K01647] [EC:2.3.3.1]
LTV02_08775  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LTV02_36110  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_37550  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_15330  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_15340  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_21955  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_28690  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
LTV02_28705  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
LTV02_28780  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_30165  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_32025  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_32825  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LTV02_36105  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LTV02_25835  biotin/lipoyl-binding protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
LTV02_25860  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
LTV02_18075  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
LTV02_09270  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
LTV02_09275  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LTV02_25735  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LTV02_03980  catalase [KO:K03781] [EC:1.11.1.6]
LTV02_29915  catalase [KO:K03781] [EC:1.11.1.6]
LTV02_25250  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
LTV02_10490  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
LTV02_10495  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
LTV02_05605  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LTV02_13530  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LTV02_17465  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LTV02_17545  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LTV02_31010  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LTV02_21700  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LTV02_14315  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LTV02_33925  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LTV02_25175  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LTV02_14340  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LTV02_05145  glycerate kinase [KO:K00865] [EC:2.7.1.165]
LTV02_32605  glycerate kinase [KO:K00865] [EC:2.7.1.165]
LTV02_05135  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LTV02_35670  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LTV02_20965  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LTV02_24845  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LTV02_22360  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nya00010  Glycolysis / Gluconeogenesis
nya00020  Citrate cycle (TCA cycle)
nya00030  Pentose phosphate pathway
nya00053  Ascorbate and aldarate metabolism
nya00071  Fatty acid degradation
nya00230  Purine metabolism
nya00250  Alanine, aspartate and glutamate metabolism
nya00260  Glycine, serine and threonine metabolism
nya00620  Pyruvate metabolism
nya00710  Carbon fixation by Calvin cycle
nya00750  Vitamin B6 metabolism
nya00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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