KEGG   PATHWAY: oco00010
Entry
oco00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Afipia carboxidovorans OM4
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oco00010  Glycolysis / Gluconeogenesis
oco00010

Module
oco_M00002  Glycolysis, core module involving three-carbon compounds [PATH:oco00010]
oco_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:oco00010]
oco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:oco00010]
Other DBs
GO: 0006096 0006094
Organism
Afipia carboxidovorans OM4 [GN:oco]
Gene
OCA4_c26220  glk; glucokinase Glk [KO:K00845] [EC:2.7.1.2]
OCA4_c28930  tal; transaldolase Tal [KO:K13810] [EC:2.2.1.2 5.3.1.9]
OCA4_pHCG3B00410  cbbF; fructose-1,6-bisphosphatase CbbF [KO:K03841] [EC:3.1.3.11]
OCA4_c20080  glpX; fructose-1,6-bisphosphatase GlpX [KO:K11532] [EC:3.1.3.11 3.1.3.37]
OCA4_c08030  fbaB; fructose-bisphosphate aldolase FbaB [KO:K01623] [EC:4.1.2.13]
OCA4_pHCG3B00460  cbbA; fructose-1,6-bisphosphate aldolase CbbA [KO:K01624] [EC:4.1.2.13]
OCA4_c17320  tpiA; triosephosphate isomerase TpiA [KO:K01803] [EC:5.3.1.1]
OCA4_c08050  gapA; glyceraldehyde-3-phosphate dehydrogenase GapA [KO:K00134] [EC:1.2.1.12]
OCA4_pHCG3B00440  gap; glyceraldehyde-3-phosphate dehydrogenase Gap [KO:K00134] [EC:1.2.1.12]
OCA4_c08040  pgk; phosphoglycerate kinase Pgk [KO:K00927] [EC:2.7.2.3]
OCA4_pHCG3B00450  pgk; phosphoglycerate kinase Pgk [KO:K00927] [EC:2.7.2.3]
OCA4_c01080  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GpmA [KO:K01834] [EC:5.4.2.11]
OCA4_c17420  eno; enolase Eno [KO:K01689] [EC:4.2.1.11]
OCA4_c15030  ttuE; pyruvate kinase TtuE [KO:K00873] [EC:2.7.1.40]
OCA4_c28830  pyk; pyruvate kinase Pyk [KO:K00873] [EC:2.7.1.40]
OCA4_c11380  ppdK; pyruvate, phosphate dikinase PpdK [KO:K01006] [EC:2.7.9.1]
OCA4_c10070  transketolase [KO:K00163] [EC:1.2.4.1]
OCA4_c17470  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
OCA4_c17480  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
OCA4_c17490  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
OCA4_c17520  lpd1; dihydrolipoyl dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
OCA4_c33070  lpd2; dihydrolipoyl dehydrogenase Lpd [KO:K00382] [EC:1.8.1.4]
OCA4_c12230  alcohol dehydrogenase, putative class 3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
OCA4_c22740  adhI; alcohol dehydrogenase class-3, S-(hydroxymethyl)glutathione dehydrogenase AdhI [KO:K00121] [EC:1.1.1.284 1.1.1.1]
OCA4_c12500  adh1; Zn-dependent alcohol dehydrogenase Adh [KO:K13953] [EC:1.1.1.1]
OCA4_c16840  adh2; NAD-dependent alcohol dehydrogenase Adh [KO:K13953] [EC:1.1.1.1]
OCA4_c24810  alcohol dehydrogenase, zinc-dependent [KO:K13979] [EC:1.1.1.2]
OCA4_c28660  dhaS; aldehyde dehydrogenase (NAD) [KO:K00128] [EC:1.2.1.3]
OCA4_c01950  acsA; acetate-coenzyme A ligase AcsA [KO:K01895] [EC:6.2.1.1]
OCA4_c07650  putative acyl-CoA synthase [KO:K24012] [EC:6.2.1.13]
OCA4_c05800  algC; phosphomannomutase/phosphoglucomutase AlgC [KO:K15778] [EC:5.4.2.8 5.4.2.2]
OCA4_c05690  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
oco00020  Citrate cycle (TCA cycle)
oco00030  Pentose phosphate pathway
oco00500  Starch and sucrose metabolism
oco00620  Pyruvate metabolism
oco00640  Propanoate metabolism
oco00710  Carbon fixation in photosynthetic organisms
KO pathway
ko00010   
LinkDB

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