KEGG   PATHWAY: ocr00030
Entry
ocr00030                    Pathway                                
Name
Pentose phosphate pathway - Ochrobactrum sp. MT180101
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ocr00030  Pentose phosphate pathway
ocr00030

Module
ocr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ocr00030]
ocr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ocr00030]
ocr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ocr00030]
ocr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ocr00030]
ocr_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ocr00030]
Other DBs
GO: 0006098
Organism
Ochrobactrum sp. MT180101 [GN:ocr]
Gene
HGK82_01125  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
HGK82_22565  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
HGK82_22570  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
HGK82_14345  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
HGK82_04255  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
HGK82_17605  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
HGK82_10165  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
HGK82_15730  transketolase [KO:K00615] [EC:2.2.1.1]
HGK82_15735  transketolase [KO:K00615] [EC:2.2.1.1]
HGK82_10545  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
HGK82_05450  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
HGK82_16085  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
HGK82_17250  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
HGK82_17255  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
HGK82_15355  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
HGK82_12725  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
HGK82_04995  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
HGK82_08270  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
HGK82_22575  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
HGK82_14465  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HGK82_10210  glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
HGK82_00520  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
HGK82_22020  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
HGK82_20525  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
HGK82_20530  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
HGK82_21245  gluconokinase [KO:K00851] [EC:2.7.1.12]
HGK82_04305  sugar kinase [KO:K00874] [EC:2.7.1.45]
HGK82_01585  glycerate kinase [KO:K11529] [EC:2.7.1.165]
HGK82_18070  aminotransferase class V-fold PLP-dependent enzyme [KO:K17468] [EC:4.3.1.29]
HGK82_10190  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
HGK82_17615  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
HGK82_17610  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
HGK82_06320  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ocr00010  Glycolysis / Gluconeogenesis
ocr00040  Pentose and glucuronate interconversions
ocr00052  Galactose metabolism
ocr00230  Purine metabolism
ocr00240  Pyrimidine metabolism
ocr00340  Histidine metabolism
ocr00630  Glyoxylate and dicarboxylate metabolism
ocr00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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